含羞草传媒

Intensive agriculture turned a wild plant into a pervasive weed, study finds

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Lead author Julia Kreiner performing DNA extractions of historical herbarium samples in the ancient DNA lab in Tuebingen, Germany (all photos courtesy Julia Kreiner/University of British Columbia)

New research published in shows how the rise of modern agriculture turned a North American native plant, common waterhemp, into a problematic agricultural weed.

An international team led by researchers at the University of British Columbia with colleagues at the 含羞草传媒, compared 187 waterhemp samples from modern farms and neighbouring wetlands with more than 100 historical samples dating as far back as 1820 that had been stored in museums across North America.

Much like the sequencing of ancient human and neanderthal remains has resolved key mysteries about human history, studying the plant鈥檚 genetic makeup over the last two centuries allowed the researchers to watch evolution in action across changing environments.

鈥淭he genetic variants that help the plant do well in modern agricultural settings have risen to high frequencies remarkably quickly since agricultural intensification in the 1960s,鈥 said study lead author . A postdoctoral researcher in UBC鈥檚 department of botany, Kreiner completed her PhD at U of T with study co-authors and , both professors in the in the Faculty of Arts & Science at U of T.

Waterhemp occurring in natural habitats, the sandy merging of a lake in southern Illinois.  

The researchers discovered hundreds of genes across the weed鈥檚 genome that aid its success on farms, with mutations in genes related to drought tolerance, rapid growth and resistance to herbicides appearing frequently.

鈥淭he types of changes we鈥檙e imposing in agricultural environments are so strong that they have consequences in neighbouring habitats that we鈥檇 usually think were natural,鈥 said Kreiner.

The findings could inform conservation efforts to preserve natural areas in landscapes dominated by agriculture. Reducing gene flow out of agricultural sites and choosing more isolated natural populations for protection could help limit the evolutionary influence of farms.

A 155-year-old waterhemp herbarium specimen from the Missouri Botanical Garden Herbarium

Common waterhemp is native to North America and was not always a problematic plant. Yet in recent years, the weed has become nearly impossible to eradicate from farms thanks to genetic adaptations including herbicide resistance.

Notably, five out of seven herbicide-resistant mutations found in current samples were absent from the historical samples. 鈥淢odern farms impose a strong filter determining which plant species and mutations can persist through time,鈥 said Kreiner. 鈥淪equencing the plant鈥檚 genes, herbicides stood out as one of the strongest agricultural filters determining which plants survive and which die.鈥

Waterhemp carrying any of the seven herbicide resistant mutations have produced an average of 1.2 times as many surviving offspring per year since 1960 compared to plants that don鈥檛 have the mutations.

Herbicide resistant mutations were also discovered in natural habitats, albeit at a lower frequency, which raises questions about the costs of these adaptations for plant life in non-agricultural settings.

鈥淚n the absence of herbicide applications, being resistant can actually be costly to a plant, so the changes happening on the farms are impacting the fitness of the plant in the wild,鈥 said Kreiner.

鈥淲hile waterhemp typically grows near lakes and streams, the genetic shifts that we鈥檙e seeing allow the plant to survive on drier land and to grow quickly to outcompete crops,鈥 said co-author Sarah Otto, Killam University Professor at UBC. 鈥淲aterhemp has basically evolved to become more of a weed given how strongly it鈥檚 been selected to thrive alongside human agricultural activities.鈥

Agricultural practices have also reshaped where the weedy variety of common waterhemp can be found to grow on the North American continent. Over the last 60 years, a weedy southwestern variety has made an increasing progression eastward, spreading their genes into local populations as a result of their competitive edge in agricultural contexts.

Waterhemp can drastically reduce corn and soy yields, as seen on the right in a corn field in Essex County, Ontario

鈥淯nderstanding the fate of these variants and how they affect plants in non-farm, 鈥榳ild鈥 populations is an important next step for our work,鈥 says Stinchcombe.

The researchers also plan to delve further into their discoveries on the rate of plant evolution over different geographic and temporal scales, with the hope of uncovering how variation in land-use across changing landscape influences the evolution of native plants.

鈥淭hese results highlight the enormous potential of studying historical genomes to understand plant adaptation on short timescales,鈥 says Wright. 鈥淓xpanding this research across scales and species will broaden our understanding of how farming and climate change are driving rapid plant evolution.鈥

Broadly speaking, the researchers say the findings mean greater consideration of the impact of farming practices on native plants is needed.

鈥淥n one hand, preserving natural areas within agricultural landscapes provides an important ecological service,鈥 says Kreiner. 鈥淥n the other hand, these natural populations will become quite genetically different from what they would have looked like in the absence of agriculture. How well these plants will be able to persist in their native habitats remains a mystery.鈥

 

With files from the University of British Columbia

 

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